HL_8IPX_017

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

C(OMG)UCAAAC(A2M)CG

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPX_017 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1509

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8IPX|1|2|C|1315
8IPX|1|2|OMG|1316
8IPX|1|2|U|1317
8IPX|1|2|C|1318
8IPX|1|2|A|1322
8IPX|1|2|A|1323
8IPX|1|2|A|1324
8IPX|1|2|C|1325
8IPX|1|2|A2M|1326
8IPX|1|2|C|1327
8IPX|1|2|G|1328

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain k

60S ribosomal protein L32