RNA 3D Hub //

8IPX Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8IPX_0011/2/37:44No text annotation
homologous
HL_8C3A_001
NA
HL_8IPX_0021/2/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_8IPX_0031/2/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_8IPX_0051/2/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8IPX_0061/2/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_8IPX_0071/2/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8IPX_0081/2/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_8IPX_0091/2/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8IPX_0801/2/368:373GNRA
homologous
HL_8P9A_122
HL_34789.2
HL_8IPX_0811/2/393:398GNRA
homologous
HL_8C3A_011
NA
HL_8IPX_0821/2/1364:1373No text annotation
HL_8IPX_0191/2/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_8IPX_0241/2/1593:1602No text annotation
homologous
HL_8C3A_020
NA
HL_8IPX_0251/2/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_8IPX_0301/2/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_8IPX_0321/2/2006:2013GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8IPX_0331/2/2257:2261Mini UNCG
geometric
HL_4WF9_037
HL_90436.2
HL_8IPX_0341/2/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_8IPX_0351/2/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8IPX_0361/2/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8IPX_0371/2/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_8IPX_0391/2/2523:2532No text annotation
homologous
HL_8C3A_035
NA
HL_8IPX_0411/2/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_8IPX_0421/2/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_8IPX_0431/2/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_8IPX_0841/2/2704:2712No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_8IPX_0451/2/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_8IPX_0461/2/2792:2799No text annotation
homologous
HL_8C3A_041
NA
HL_8IPX_0471/2/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_8IPX_0481/2/2872:2877UNCG
geometric
HL_5TBW_043
NA
HL_8IPX_0501/2/3614:3618No text annotation
HL_8IPX_0511/2/3639:3649No text annotation
homologous
HL_8C3A_046
NA
HL_8IPX_0541/2/3873:3882No text annotation
geometric
HL_8C3A_006
NA
HL_8IPX_0621/2/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_8IPX_0861/2/4473:4482No text annotation
HL_8IPX_0641/2/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_8IPX_0661/2/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_8IPX_0671/2/4603:4608GNRA
homologous
HL_5TBW_065
NA
HL_8IPX_0681/2/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8IPX_0691/2/4688:4702No text annotation
geometric
HL_5TBW_067
NA
HL_8IPX_0711/2/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_8IPX_0721/2/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_8IPX_0761/8/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_8IPX_0771/8/68:90No text annotation
HL_8IPX_0781/8/107:112No text annotation
homologous
HL_8C3A_076
NA

Problematic loops

#loop idProblemSequence
HL_8IPX_004Externally structured
HL_8IPX_010GNRA with extra cWW
HL_8IPX_011No text annotation
HL_8IPX_012No text annotation
HL_8IPX_013No text annotation
HL_8IPX_014No text annotation
HL_8IPX_015Externally structured
HL_8IPX_016No text annotation
HL_8IPX_017No text annotation
HL_8IPX_018No text annotation
HL_8IPX_020No text annotation
HL_8IPX_021No text annotation
HL_8IPX_022No text annotation
HL_8IPX_023GNRA
HL_8IPX_026No text annotation
HL_8IPX_027No text annotation
HL_8IPX_028No text annotation
HL_8IPX_029Other HL
HL_8IPX_031No text annotation
HL_8IPX_038No text annotation
HL_8IPX_040GNRA with extra cWW
HL_8IPX_083GNRA
HL_8IPX_044No text annotation
HL_8IPX_049No text annotation
HL_8IPX_052GNRA variation
HL_8IPX_053GNRA
HL_8IPX_055No text annotation
HL_8IPX_056No text annotation
HL_8IPX_087No text annotation
HL_8IPX_057No text annotation
HL_8IPX_058No text annotation
HL_8IPX_059No text annotation
HL_8IPX_060No text annotation
HL_8IPX_061GNRA
HL_8IPX_085No text annotation
HL_8IPX_063No text annotation
HL_8IPX_065No text annotation
HL_8IPX_070No text annotation
HL_8IPX_073No text annotation
HL_8IPX_074No text annotation
HL_8IPX_075No text annotation
HL_8IPX_079No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8IPX_0011/2/6:7,
1/8/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_8IPX_0021/2/12:14,
1/8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_8IPX_0031/2/16:18,
1/8/139:141		No text annotation
geometric
IL_3ICQ_003
NA
IL_8IPX_0041/2/26:27,
1/2/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_8IPX_0051/2/30:37,
1/2/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_8IPX_0061/2/81:88,
1/2/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_8IPX_0071/2/118:122,
1/2/147:153		No text annotation
IL_8IPX_0081/2/125:126,
1/2/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_8IPX_0121/2/195:196,
1/2/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_8IPX_0131/2/199:201,
1/2/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_8IPX_0141/2/339:342,
1/8/32:33		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_55206.1
IL_8IPX_0151/2/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_8IPX_0161/2/387:390,
1/2/401:414		No text annotation
homologous
IL_8C3A_015
NA
IL_8IPX_0171/2/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8IPX_0181/2/443:446,
1/2/1300:1304		No text annotation
geometric
IL_6AZ4_001
NA
IL_8IPX_1691/2/448:450,
1/2/1297:1298		No text annotation
IL_8IPX_0281/2/508:510,
1/2/649:650		Single bulged A
geometric
IL_6WPI_001
IL_14190.2
IL_8IPX_0301/2/709:710,
1/2/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_8IPX_0311/2/723:724,
1/2/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8IPX_0321/2/727:731,
1/2/938:939		No text annotation
IL_8IPX_0331/2/732:735,
1/2/928:937		No text annotation
IL_8IPX_0361/2/745:752,
1/2/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_8IPX_0391/2/1073:1074,
1/2/1237:1239		Single bulged A
geometric
IL_4R4V_003
IL_14190.2
IL_8IPX_0491/2/1357:1360,
1/2/1379:1382		No text annotation
IL_8IPX_1741/2/1357:1361,
1/2/1376:1382		No text annotation
IL_8IPX_0501/2/1360:1361,
1/2/1376:1379		Major groove intercalation
geometric
IL_1U9S_003
IL_71421.2
IL_8IPX_0511/2/1425:1429,
1/2/1455:1460		No text annotation
geometric
IL_3BBM_001
IL_47352.2
IL_8IPX_0521/2/1431:1434,
1/2/1450:1453		Double sheared
geometric
IL_1SA9_002
IL_58355.2
IL_8IPX_0531/2/1467:1468,
1/2/1496:1498		Single bulged A
homologous
IL_5TBW_024
NA
IL_8IPX_1751/2/1520:1522,
1/2/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8IPX_1761/2/1522:1526,
1/2/1648:1655		No text annotation
homologous
IL_8C3A_030
NA
IL_8IPX_0571/2/1545:1546,
1/2/1612:1614		Single bulged A
homologous
IL_8C3A_031
NA
IL_8IPX_0581/2/1550:1551,
1/2/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_8IPX_0591/2/1551:1555,
1/2/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_8IPX_0611/2/1590:1592,
1/2/1603:1604		Single bulged U
geometric
IL_7A0S_075
IL_97561.2
IL_8IPX_0621/2/1624:1626,
1/2/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_8IPX_0631/2/1671:1673,
1/2/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8IPX_0641/2/1686:1688,
1/2/1848:1851		No text annotation
IL_8IPX_0661/2/1723:1725,
1/2/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_8IPX_1781/2/1905:1909,
1/2/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8IPX_0711/2/1911:1918,
1/2/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_8IPX_0721/2/1918:1920,
1/2/2063:2064		No text annotation
IL_8IPX_0731/2/1920:1922,
1/2/2062:2063		No text annotation
IL_8IPX_0741/2/1926:1933,
1/2/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_8IPX_0761/2/1946:1948,
1/2/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_8IPX_0771/2/1957:1965,
1/2/2022:2026		Kink-turn
homologous
IL_8C3A_057
NA
IL_8IPX_0811/2/2083:2085,
1/2/2272:2273		Single bulged C
geometric
IL_4C7O_003
IL_05642.2
IL_8IPX_0821/2/2290:2292,
1/2/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_8IPX_0841/2/2299:2301,
1/2/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_8IPX_0851/2/2302:2309,
1/2/2329:2333		Kink-turn
homologous
IL_5TBW_059
NA
IL_8IPX_0861/2/2312:2314,
1/2/2325:2326		Single bulged A
geometric
IL_5WWT_001
IL_14190.2
IL_8IPX_1791/2/2358:2364,
1/2/3858:3863		No text annotation
homologous
IL_8C3A_065
NA
IL_8IPX_0881/2/2415:2419,
1/2/2427:2429		Minor groove platform
geometric
IL_5J7L_041
NA
IL_8IPX_0891/2/2446:2450,
1/2/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8IPX_0911/2/2542:2547,
1/2/2772:2774		No text annotation
geometric
IL_6DME_003
IL_75527.2
IL_8IPX_0921/2/2549:2550,
1/2/2768:2770		Single bulged U
geometric
IL_2R8S_004
IL_97561.2
IL_8IPX_0931/2/2589:2593,
1/2/2752:2756		Triple sheared
homologous
IL_8P9A_295
IL_15190.2
IL_8IPX_0941/2/2613:2614,
1/2/2724:2726		Single bulged A
geometric
IL_7A0S_012
IL_14190.2
IL_8IPX_0951/2/2614:2615,
1/2/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_8IPX_0961/2/2646:2648,
1/2/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_8IPX_0971/2/2651:2653,
1/2/2681:2682		Single bulged G
geometric
IL_5J7L_019
NA
IL_8IPX_0981/2/2656:2662,
1/2/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_8IPX_0991/2/2704:2705,
1/2/2710:2712		No text annotation
IL_8IPX_1001/2/2832:2838,
1/2/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_8IPX_1011/2/2844:2846,
1/2/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_8IPX_1021/2/2847:2850,
1/2/3840:3841		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_8IPX_1801/2/2847:2855,
1/2/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_8IPX_1031/2/2850:2855,
1/2/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_8IPX_1041/2/2867:2872,
1/2/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_8IPX_1061/2/2896:2897,
1/2/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_8IPX_1091/2/3632:3633,
1/2/3827:3829		Single bulged A
homologous
IL_8C3A_087
NA
IL_8IPX_1101/2/3660:3665,
1/2/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_8IPX_1171/2/3895:3898,
1/2/4563:4565		No text annotation
homologous
IL_8C3A_096
NA
IL_8IPX_1191/2/3900:3901,
1/2/4558:4561		Major groove platform
geometric
IL_7A0S_085
IL_48076.8
IL_8IPX_1231/2/3927:3929,
1/2/4181:4184		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_8IPX_1241/2/4082:4088,
1/2/4161:4164		No text annotation
homologous
IL_5TBW_096
NA
IL_8IPX_1301/2/4347:4350,
1/2/4364:4365		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_8IPX_1321/2/4456:4458,
1/2/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_8IPX_1331/2/4458:4459,
1/2/4517:4520		Multiple bulged bases
geometric
IL_4V9F_088
IL_44609.2
IL_8IPX_1341/2/4466:4468,
1/2/4489:4491		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_8IPX_1831/2/4466:4470,
1/2/4485:4491		No text annotation
IL_8IPX_1351/2/4468:4470,
1/2/4485:4489		No text annotation
IL_8IPX_1381/2/4537:4538,
1/2/4547:4549		Minor groove platform
geometric
IL_1U6B_007
IL_34520.2
IL_8IPX_1391/2/4580:4582,
1/2/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_8IPX_1401/2/4582:4585,
1/2/4717:4721		Other IL
geometric
IL_4WF9_054
IL_74317.1
IL_8IPX_1841/2/4590:4592,
1/2/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.2
IL_8IPX_1411/2/4596:4603,
1/2/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_8IPX_1431/2/4624:4629,
1/2/4669:4673		No text annotation
IL_8IPX_1851/2/4632:4637,
1/2/4662:4666		No text annotation
homologous
IL_8P9A_346
IL_98200.1
IL_8IPX_1451/2/4638:4640,
1/2/4659:4661		Isolated cWH basepair
geometric
IL_3SJ2_002
IL_10892.2
IL_8IPX_1461/2/4641:4642,
1/2/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_8IPX_1861/2/4681:4685,
1/2/4705:4709		UAA/GAN
homologous
IL_8C3A_129
NA
IL_8IPX_1491/2/4743:4746,
1/2/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_8IPX_1501/2/4749:4751,
1/2/4948:4951		No text annotation
IL_8IPX_1511/2/4756:4765,
1/2/4869:4877		No text annotation
IL_8IPX_1531/2/4885:4889,
1/2/4930:4934		No text annotation
IL_8IPX_1561/2/4972:4975,
1/2/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8IPX_1571/2/4992:4994,
1/2/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_01003.2
IL_8IPX_1581/2/4996:4997,
1/2/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_05642.2
IL_8IPX_1591/2/5000:5002,
1/2/5045:5050		No text annotation
homologous
IL_8C3A_138
NA
IL_8IPX_1601/2/5003:5009,
1/2/5039:5044		No text annotation
IL_8IPX_1611/2/5012:5014,
1/2/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_8IPX_1621/2/5014:5017,
1/2/5032:5035		Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_8IPX_1871/3/71:82,
1/3/94:104		No text annotation
IL_8IPX_1671/3/82:85,
1/3/92:94		Isolated non-canonical cWW pair
homologous
IL_7A0S_107
IL_71625.2
IL_8IPX_1681/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_8IPX_009No text annotation
IL_8IPX_010Isolated non-canonical cWW pair
IL_8IPX_011No text annotation
IL_8IPX_019Isolated non-canonical cWW pair
IL_8IPX_020Single bulged C
IL_8IPX_021Isolated non-canonical cWW pair
IL_8IPX_022No text annotation
IL_8IPX_023Major groove intercalation
IL_8IPX_024Minor groove platform
IL_8IPX_025Tandem non-canonical cWW pairs
IL_8IPX_026No text annotation
IL_8IPX_027Multiple bulged bases
IL_8IPX_029No text annotation
IL_8IPX_034No text annotation
IL_8IPX_035Isolated non-canonical cWW pair
IL_8IPX_037Isolated non-canonical cWW contact
IL_8IPX_038Isolated non-canonical cWW pair
IL_8IPX_040No text annotation
IL_8IPX_170Single stack bend with SAM intercalation
IL_8IPX_041Isolated non-canonical cWW pair
IL_8IPX_171Single stack bend
IL_8IPX_042Isolated cWH basepair
IL_8IPX_043Single bulged C
IL_8IPX_044No text annotation
IL_8IPX_188Single stack bend
IL_8IPX_045No text annotation
IL_8IPX_172Single stack bend
IL_8IPX_046No text annotation
IL_8IPX_173No text annotation
IL_8IPX_047Single bulged G
IL_8IPX_048Isolated non-canonical cWW pair
IL_8IPX_054Single stack bend
IL_8IPX_055No text annotation
IL_8IPX_056No text annotation
IL_8IPX_177Major groove platform with extra cWW
IL_8IPX_060No text annotation
IL_8IPX_065No text annotation
IL_8IPX_067Single bulged G
IL_8IPX_068Isolated non-canonical cWW pair
IL_8IPX_069No text annotation
IL_8IPX_070No text annotation
IL_8IPX_075No text annotation
IL_8IPX_078Isolated non-canonical cWW pair
IL_8IPX_079No text annotation
IL_8IPX_080Major groove platform with extra cWW
IL_8IPX_083Isolated non-canonical cWW pair
IL_8IPX_087Tandem non-canonical cWW pairs
IL_8IPX_090Isolated non-canonical cWW pair
IL_8IPX_105Isolated non-canonical cWW pair
IL_8IPX_107No text annotation
IL_8IPX_108No text annotation
IL_8IPX_111Major groove intercalation
IL_8IPX_112Major groove intercalation
IL_8IPX_113Single stack bend
IL_8IPX_114No text annotation
IL_8IPX_115No text annotation
IL_8IPX_116Isolated non-canonical cWW pair
IL_8IPX_118Isolated non-canonical cWW pair
IL_8IPX_120Single bulged U
IL_8IPX_121Minor groove platform
IL_8IPX_122Isolated non-canonical cWW pair
IL_8IPX_181No text annotation
IL_8IPX_125No text annotation
IL_8IPX_182No text annotation
IL_8IPX_126Tandem non-canonical cWW pairs
IL_8IPX_127No text annotation
IL_8IPX_128Isolated non-canonical cWW pair
IL_8IPX_129Isolated non-canonical cWW pair
IL_8IPX_131No text annotation
IL_8IPX_136Stack and bulge
IL_8IPX_137Isolated non-canonical cWW pair
IL_8IPX_142Isolated non-canonical cWW pair
IL_8IPX_144Triple sheared related
IL_8IPX_147UAA/GAN with extra cWW
IL_8IPX_148Isolated non-canonical cWW pair
IL_8IPX_152Isolated non-canonical cWW pair
IL_8IPX_154No text annotation
IL_8IPX_155Single bulged C
IL_8IPX_163Single bulged A
IL_8IPX_164Minor groove platform related
IL_8IPX_165No text annotation
IL_8IPX_166No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8IPX_0011/2/112:116,
1/2/155:160,
1/2/275:278		No text annotation
J3_8IPX_0111/2/351:367,
1/2/374:379,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8IPX_0121/2/380:387,
1/2/414:415,
1/8/19:20		No text annotation
homologous
J3_8P9A_046
J3_68715.1
J3_8IPX_0131/2/451:455,
1/2/701:705,
1/2/1292:1296		No text annotation
J3_8IPX_0141/2/712:713,
1/2/955:976,
1/2/1278:1284		No text annotation
J3_8IPX_0021/2/1531:1537,
1/2/1622:1624,
1/2/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_8IPX_0031/2/1546:1548,
1/2/1580:1584,
1/2/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_8IPX_0151/2/1726:1727,
1/2/1802:1806,
1/2/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8IPX_0051/2/2393:2399,
1/2/2805:2807,
1/2/2819:2822		No text annotation
homologous
J3_8C3A_006
NA
J3_8IPX_0061/2/2402:2405,
1/2/2785:2791,
1/2/2800:2802		No text annotation
homologous
J3_8P9A_054
J3_76012.1
J3_8IPX_0161/2/2440:2445,
1/2/2515:2519,
1/2/2536:2537		No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_8IPX_0231/2/2551:2555,
1/2/2572:2575,
1/2/2757:2767		No text annotation
J3_8IPX_0171/2/2575:2576,
1/2/2585:2589,
1/2/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_8IPX_0181/2/2598:2602,
1/2/2737:2738,
1/2/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8IPX_0081/2/3937:3939,
1/2/4074:4078,
1/2/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_8IPX_0191/2/4091:4097,
1/2/4112:4129,
1/2/4155:4158		No text annotation
J3_8IPX_0091/2/4463:4466,
1/2/4491:4493,
1/2/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_8IPX_0201/2/4751:4754,
1/2/4879:4883,
1/2/4936:4948		No text annotation
J3_8IPX_0101/2/4970:4972,
1/2/4986:4991,
1/2/5060:5063		No text annotation
J3_8IPX_0221/8/44:45,
1/8/58:64,
1/8/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_8IPX_0011/2/111:112,
1/2/278:283,
1/2/304:310,
1/2/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8IPX_0021/2/196:199,
1/2/215:222,
1/2/226:228,
1/2/240:244		No text annotation
J4_8IPX_0041/2/2365:2371,
1/2/2389:2391,
1/2/2824:2829,
1/2/3856:3857		No text annotation
J4_8IPX_0051/2/2406:2410,
1/2/2434:2439,
1/2/2538:2539,
1/2/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_8IPX_0061/2/2618:2619,
1/2/2637:2642,
1/2/2692:2698,
1/2/2718:2719		No text annotation
J4_8IPX_0071/2/4587:4590,
1/2/4620:4621,
1/2/4676:4678,
1/2/4712:4715		No text annotation
J5_8IPX_0011/2/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_8IPX_0021/2/1335:1340,
1/2/1516:1519,
1/2/1658:1661,
1/2/2288:2290,
1/2/2345:2351		No text annotation
homologous
J5_8C3A_002
NA
J5_8IPX_0031/2/2855:2863,
1/2/2887:2888,
1/2/3613:3614,
1/2/3618:3626,
1/2/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J6_8IPX_0011/2/21:26,
1/2/57:67,
1/2/74:78,
1/2/105:109,
1/2/332:339,
1/8/33:35		No text annotation
J6_8IPX_0021/2/1352:1355,
1/2/1384:1388,
1/2/1395:1399,
1/2/1418:1421,
1/2/1464:1466,
1/2/1499:1504		No text annotation
J7_8IPX_0011/2/1666:1671,
1/2/1684:1685,
1/2/1852:1855,
1/2/1879:1884,
1/2/1895:1899,
1/2/2077:2078,
1/2/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_8IPX_004No text annotation
J3_8IPX_007No text annotation
J3_8IPX_021No text annotation
J4_8IPX_003No text annotation

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