HL_8IPX_056

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAGCCCCGAGGGGCUC

Length

16 nucleotides

Bulged bases

8IPX|1|2|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPX_056 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2615

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IPX|1|2|G|4097
8IPX|1|2|A|4098
8IPX|1|2|G|4099
8IPX|1|2|C|4100
8IPX|1|2|C|4101
8IPX|1|2|C|4102
8IPX|1|2|C|4103
8IPX|1|2|G|4104
8IPX|1|2|A|4105
8IPX|1|2|G|4106
8IPX|1|2|G|4107
8IPX|1|2|G|4108
8IPX|1|2|G|4109
8IPX|1|2|C|4110
8IPX|1|2|U|4111
8IPX|1|2|C|4112

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a