HL_8IPX_082

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

8IPX|1|2|C|1365, 8IPX|1|2|G|1366, 8IPX|1|2|C|1367, 8IPX|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|U|1364
8IPX|1|2|C|1365
8IPX|1|2|G|1366
8IPX|1|2|C|1367
8IPX|1|2|A|1368
8IPX|1|2|C|1369
8IPX|1|2|G|1370
8IPX|1|2|A|1371
8IPX|1|2|A|1372
8IPX|1|2|A|1373

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain D

60S ribosomal protein L4

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15

Chain h

60S ribosomal protein L26