HL_8IPY_007
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGUGAG(B9B)C
- Length
- 9 nucleotides
- Bulged bases
- 8IPY|1|2|G|232, 8IPY|1|2|G|236
- QA status
- Modified nucleotides: B9B
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPY_007 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.4288
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8IPY|1|2|G|230
8IPY|1|2|U|231
8IPY|1|2|G|232
8IPY|1|2|U|233
8IPY|1|2|G|234
8IPY|1|2|A|235
8IPY|1|2|G|236
8IPY|1|2|B9B|237
8IPY|1|2|C|238
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L4
- Chain h
- 60S ribosomal protein L26
Coloring options: