3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUGAAG(A2M)G
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8IPY_011 not in the Motif Atlas
Geometric match to HL_4WF9_041
Geometric discrepancy: 0.3393
The information below is about HL_4WF9_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_65167.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8IPY|1|2|U|392
8IPY|1|2|U|393
8IPY|1|2|G|394
8IPY|1|2|A|395
8IPY|1|2|A|396
8IPY|1|2|G|397
8IPY|1|2|A2M|398
8IPY|1|2|G|399

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain Y
60S ribosomal protein L17

Coloring options:


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