3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCUCUCCAGUCCG
Length
13 nucleotides
Bulged bases
8IPY|1|2|C|1441
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8IPY_021 not in the Motif Atlas
Geometric match to HL_8C3A_039
Geometric discrepancy: 0.384
The information below is about HL_8C3A_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

8IPY|1|2|C|1436
8IPY|1|2|C|1437
8IPY|1|2|U|1438
8IPY|1|2|C|1439
8IPY|1|2|U|1440
8IPY|1|2|C|1441
8IPY|1|2|C|1442
8IPY|1|2|A|1443
8IPY|1|2|G|1444
8IPY|1|2|U|1445
8IPY|1|2|C|1446
8IPY|1|2|C|1447
8IPY|1|2|G|1448

Current chains

Chain 2
28S rRNA

Nearby chains

Chain A
60S ribosomal protein L29
Chain D
60S ribosomal protein L4
Chain Z
60S ribosomal protein L18
Chain p
60S ribosomal protein L7

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