HL_8IPY_021
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- 8IPY|1|2|C|1441
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPY_021 not in the Motif Atlas
- Geometric match to HL_8C3A_039
- Geometric discrepancy: 0.384
- The information below is about HL_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8IPY|1|2|C|1436
8IPY|1|2|C|1437
8IPY|1|2|U|1438
8IPY|1|2|C|1439
8IPY|1|2|U|1440
8IPY|1|2|C|1441
8IPY|1|2|C|1442
8IPY|1|2|A|1443
8IPY|1|2|G|1444
8IPY|1|2|U|1445
8IPY|1|2|C|1446
8IPY|1|2|C|1447
8IPY|1|2|G|1448
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L29
- Chain D
- 60S ribosomal protein L4
- Chain Z
- 60S ribosomal protein L18
- Chain p
- 60S ribosomal protein L7
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