HL_8IPY_055

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

8IPY|1|2|C|3878, 8IPY|1|2|G|3881

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPY_055 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.0681

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IPY|1|2|G|3873
8IPY|1|2|G|3874
8IPY|1|2|G|3875
8IPY|1|2|A|3876
8IPY|1|2|A|3877
8IPY|1|2|C|3878
8IPY|1|2|G|3879
8IPY|1|2|P7G|3880
8IPY|1|2|G|3881
8IPY|1|2|C|3882

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain k

60S ribosomal protein L32

Chain u

Guanine nucleotide-binding protein-like 3