HL_8IPY_075
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUCUG
- Length
- 6 nucleotides
- Bulged bases
- 8IPY|1|3|C|39, 8IPY|1|3|U|40
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPY_075 not in the Motif Atlas
- Homologous match to HL_8C3A_073
- Geometric discrepancy: 0.3553
- The information below is about HL_8C3A_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47787.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8IPY|1|3|C|36
8IPY|1|3|G|37
8IPY|1|3|U|38
8IPY|1|3|C|39
8IPY|1|3|U|40
8IPY|1|3|G|41
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 60S ribosomal protein L11
- Chain R
- 60S ribosomal protein L5
Coloring options: