HL_8IPY_080
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCCUC
- Length
- 7 nucleotides
- Bulged bases
- 8IPY|1|8|C|125, 8IPY|1|8|U|127
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPY_080 not in the Motif Atlas
- Geometric match to HL_4V88_198
- Geometric discrepancy: 0.291
- The information below is about HL_4V88_198
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8IPY|1|8|G|122
8IPY|1|8|U|123
8IPY|1|8|U|124
8IPY|1|8|C|125
8IPY|1|8|C|126
8IPY|1|8|U|127
8IPY|1|8|C|128
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Ribosome biogenesis protein NOP53
- Chain g
- 60S ribosomal protein L23a
- Chain q
- Pescadillo homolog
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