HL_8IR1_021

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

8IR1|1|2|C|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_021 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3175

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IR1|1|2|C|1436
8IR1|1|2|C|1437
8IR1|1|2|U|1438
8IR1|1|2|C|1439
8IR1|1|2|U|1440
8IR1|1|2|C|1441
8IR1|1|2|C|1442
8IR1|1|2|A|1443
8IR1|1|2|G|1444
8IR1|1|2|U|1445
8IR1|1|2|C|1446
8IR1|1|2|C|1447
8IR1|1|2|G|1448

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain p

60S ribosomal protein L7