HL_8IR1_025

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAAAC

Length

7 nucleotides

Bulged bases

8IR1|1|2|A|1630

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_025 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3522

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8IR1|1|2|G|1627
8IR1|1|2|C|1628
8IR1|1|2|G|1629
8IR1|1|2|A|1630
8IR1|1|2|A|1631
8IR1|1|2|A|1634
8IR1|1|2|C|1635

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain M

60S ribosomal protein L37

Chain m

60S ribosomal protein L8