3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAUGGAAGUCG
Length
11 nucleotides
Bulged bases
8IR1|1|2|A|1984
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8IR1_031 not in the Motif Atlas
Homologous match to HL_8C3A_027
Geometric discrepancy: 0.2899
The information below is about HL_8C3A_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

8IR1|1|2|C|1978
8IR1|1|2|A|1979
8IR1|1|2|U|1980
8IR1|1|2|G|1981
8IR1|1|2|G|1982
8IR1|1|2|A|1983
8IR1|1|2|A|1984
8IR1|1|2|G|1985
8IR1|1|2|U|1986
8IR1|1|2|C|1987
8IR1|1|2|G|1988

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain N
Notchless protein homolog 1
Chain w
G Protein Nucleolar 2
Chain y
60S ribosomal protein L12

Coloring options:


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