3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8IR1_066 not in the Motif Atlas
Geometric match to HL_5J7L_197
Geometric discrepancy: 0.158
The information below is about HL_5J7L_197
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8IR1|1|2|C|4603
8IR1|1|2|G|4604
8IR1|1|2|A|4605
8IR1|1|2|G|4606
8IR1|1|2|A|4607
8IR1|1|2|G|4608

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain 6
Eukaryotic translation initiation factor 6
Chain I
60S ribosomal protein L9
Chain J
Ribosome biogenesis protein NSA2 homolog
Chain e
60S ribosomal protein L23
Chain w
G Protein Nucleolar 2

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