HL_8IR1_072

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8IR1|1|2|C|5023

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_072 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2795

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8IR1|1|2|C|5021
8IR1|1|2|U|5022
8IR1|1|2|C|5023
8IR1|1|2|C|5024
8IR1|1|2|C|5025
8IR1|1|2|U|5026
8IR1|1|2|C|5027
8IR1|1|2|G|5028

Current chains

Chain 2

28S rRNA

Nearby chains