HL_8IR1_073
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IR1_073 not in the Motif Atlas
- Geometric match to HL_7A0S_001
- Geometric discrepancy: 0.1979
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8IR1|1|8|C|47
8IR1|1|8|A|48
8IR1|1|8|G|49
8IR1|1|8|C|50
8IR1|1|8|U|51
8IR1|1|8|A|52
8IR1|1|8|G|53
8IR1|1|8|C|54
8IR1|1|8|U|55
8IR1|1|8|G|56
Current chains
- Chain 8
- 5.8S rRMA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- GTP-binding protein 4
- Chain H
- 60S ribosomal protein L35
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain g
- 60S ribosomal protein L23a
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