HL_8IR1_087
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IR1_087 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.2069
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8IR1|1|W|A|32
8IR1|1|W|U|33
8IR1|1|W|C|34
8IR1|1|W|U|35
8IR1|1|W|C|36
8IR1|1|W|G|37
8IR1|1|W|U|38
8IR1|1|W|C|39
8IR1|1|W|U|40
8IR1|1|W|G|41
8IR1|1|W|A|42
8IR1|1|W|U|43
8IR1|1|W|C|44
8IR1|1|W|U|45
Current chains
- Chain W
- 5S RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- 60S ribosomal protein L11
- Chain C
- 60S ribosomal protein L5
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