HL_8IR3_008

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8IR3|1|2|G|294, 8IR3|1|2|A|295, 8IR3|1|2|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR3_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1469

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8IR3|1|2|C|289
8IR3|1|2|U|290
8IR3|1|2|U|291
8IR3|1|2|G|292
8IR3|1|2|G|293
8IR3|1|2|G|294
8IR3|1|2|A|295
8IR3|1|2|A|296
8IR3|1|2|U|297
8IR3|1|2|G|298

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15