HL_8IR3_026

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8IR3|1|2|C|1676, 8IR3|1|2|U|1677, 8IR3|1|2|C|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR3_026 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.5782

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8IR3|1|2|C|1675
8IR3|1|2|C|1676
8IR3|1|2|U|1677
8IR3|1|2|C|1678
8IR3|1|2|A|1679
8IR3|1|2|G|1680

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain R

Ribosome biogenesis regulatory protein homolog

Chain w

G Protein Nucleolar 2