HL_8IR3_061

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

8IR3|1|2|G|4272, 8IR3|1|2|A|4273, 8IR3|1|2|G|4275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR3_061 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.204

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8IR3|1|2|C|4270
8IR3|1|2|A|4271
8IR3|1|2|G|4272
8IR3|1|2|A|4273
8IR3|1|2|A|4274
8IR3|1|2|G|4275
8IR3|1|2|G|4276
8IR3|1|2|G|4277

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L5

Chain T

Ribosome production factor 2 homolog