HL_8IR3_087

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR3_087 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2478

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8IR3|1|2|G|4320
8IR3|1|2|U|4321
8IR3|1|2|G|4322
8IR3|1|2|A|4323
8IR3|1|2|A|4324
8IR3|1|2|A|4325
8IR3|1|2|G|4326
8IR3|1|2|C|4327

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L5

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain T

Ribosome production factor 2 homolog