HL_8J1Z_045

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

8J1Z|1|a|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_045 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.3513

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8J1Z|1|a|C|1868
8J1Z|1|a|G|1869
8J1Z|1|a|C|1870
8J1Z|1|a|A|1871
8J1Z|1|a|A|1872
8J1Z|1|a|G|1873

Current chains

Chain a

23S rRNA

Nearby chains