HL_8J1Z_046

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(PSU)AA(PSU)AAC

Length

8 nucleotides

Bulged bases

8J1Z|1|a|A|1916

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_046 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.3742

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8J1Z|1|a|G|1910
8J1Z|1|a|PSU|1911
8J1Z|1|a|A|1912
8J1Z|1|a|A|1916
8J1Z|1|a|PSU|1917
8J1Z|1|a|A|1918
8J1Z|1|a|A|1919
8J1Z|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains