HL_8J1Z_052

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8J1Z|1|a|A|2268, 8J1Z|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1002

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|C|2264
8J1Z|1|a|U|2265
8J1Z|1|a|A|2266
8J1Z|1|a|A|2267
8J1Z|1|a|A|2268
8J1Z|1|a|G|2269
8J1Z|1|a|A|2270
8J1Z|1|a|G|2271
8J1Z|1|a|U|2272
8J1Z|1|a|A|2273
8J1Z|1|a|A|2274
8J1Z|1|a|C|2275
8J1Z|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain v

50S ribosomal protein L27