HL_8J1Z_053

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_053 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2002

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8J1Z|1|a|G|2303
8J1Z|1|a|G|2304
8J1Z|1|a|U|2305
8J1Z|1|a|C|2306
8J1Z|1|a|G|2307
8J1Z|1|a|G|2308
8J1Z|1|a|A|2309
8J1Z|1|a|C|2310
8J1Z|1|a|A|2311
8J1Z|1|a|U|2312
8J1Z|1|a|C|2313

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5