HL_8J1Z_057

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8J1Z|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_057 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0521

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8J1Z|1|a|U|2404
8J1Z|1|a|G|2405
8J1Z|1|a|A|2406
8J1Z|1|a|A|2407
8J1Z|1|a|U|2408
8J1Z|1|a|G|2409
8J1Z|1|a|G|2410
8J1Z|1|a|A|2411
8J1Z|1|a|A|2412
8J1Z|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15