HL_8J1Z_060

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8J1Z|1|a|G|2751, 8J1Z|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_060 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1043

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|C|2745
8J1Z|1|a|U|2746
8J1Z|1|a|G|2747
8J1Z|1|a|A|2748
8J1Z|1|a|A|2749
8J1Z|1|a|A|2750
8J1Z|1|a|G|2751
8J1Z|1|a|C|2752
8J1Z|1|a|A|2753
8J1Z|1|a|U|2754
8J1Z|1|a|C|2755
8J1Z|1|a|U|2756
8J1Z|1|a|A|2757
8J1Z|1|a|A|2758
8J1Z|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L13