HL_8J1Z_066

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGUAACACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8J1Z_066 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.2678

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8J1Z|1|a|G|711
8J1Z|1|a|G|712
8J1Z|1|a|G|713
8J1Z|1|a|U|714
8J1Z|1|a|A|715
8J1Z|1|a|A|716
8J1Z|1|a|C|717
8J1Z|1|a|A|718
8J1Z|1|a|C|719
8J1Z|1|a|U|720

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2