HL_8JDJ_012
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 8JDJ|1|D|G|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_012 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.13
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8JDJ|1|D|G|230
8JDJ|1|D|U|231
8JDJ|1|D|G|232
8JDJ|1|D|U|233
8JDJ|1|D|G|234
8JDJ|1|D|A|235
8JDJ|1|D|G|236
8JDJ|1|D|G|237
8JDJ|1|D|C|238
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain F
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain I
- 60S ribosomal protein L4
- Chain d
- 60S ribosomal protein L26
Coloring options: