HL_8JDJ_013
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 8JDJ|1|D|G|294, 8JDJ|1|D|A|295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_013 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.3423
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8JDJ|1|D|C|289
8JDJ|1|D|U|290
8JDJ|1|D|U|291
8JDJ|1|D|G|292
8JDJ|1|D|G|293
8JDJ|1|D|G|294
8JDJ|1|D|A|295
8JDJ|1|D|A|296
8JDJ|1|D|U|297
8JDJ|1|D|G|298
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L15
- Chain f
- 60S ribosomal protein L27a
- Chain t
- 60S ribosomal protein L36a
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