HL_8JDJ_045

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8JDJ|1|D|U|2707, 8JDJ|1|D|C|2709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_045 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2328

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8JDJ|1|D|G|2705
8JDJ|1|D|G|2706
8JDJ|1|D|U|2707
8JDJ|1|D|U|2708
8JDJ|1|D|C|2709
8JDJ|1|D|C|2710

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19

Chain Z

60S ribosomal protein L22