HL_8JDJ_066

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8JDJ|1|D|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_066 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0973

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8JDJ|1|D|A|4474
8JDJ|1|D|G|4475
8JDJ|1|D|C|4476
8JDJ|1|D|A|4477
8JDJ|1|D|G|4478
8JDJ|1|D|A|4479
8JDJ|1|D|A|4480
8JDJ|1|D|U|4481

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L9

Chain r

Ubiquitin-60S ribosomal protein L40