HL_8JDJ_079
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_079 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4813
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8JDJ|1|F|G|68
8JDJ|1|F|U|69
8JDJ|1|F|G|70
8JDJ|1|F|A|71
8JDJ|1|F|A|72
8JDJ|1|F|U|73
8JDJ|1|F|U|74
8JDJ|1|F|OMG|75
8JDJ|1|F|C|76
8JDJ|1|F|A|77
8JDJ|1|F|G|78
8JDJ|1|F|G|79
8JDJ|1|F|A|80
8JDJ|1|F|C|81
8JDJ|1|F|A|82
8JDJ|1|F|C|83
8JDJ|1|F|A|84
8JDJ|1|F|U|85
8JDJ|1|F|U|86
8JDJ|1|F|G|87
8JDJ|1|F|A|88
8JDJ|1|F|U|89
8JDJ|1|F|C|90
Current chains
- Chain F
- 5.8S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain d
- 60S ribosomal protein L26
- Chain m
- 60S ribosomal protein L35
- Chain o
- 60S ribosomal protein L37
- Chain q
- 60S ribosomal protein L39
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