HL_8JDJ_086

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8JDJ|1|w|A|292, 8JDJ|1|w|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_086 not in the Motif Atlas

Homologous match to HL_8P9A_195

Geometric discrepancy: 0.5996

The information below is about HL_8P9A_195

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8JDJ|1|w|G|288
8JDJ|1|w|G|289
8JDJ|1|w|U|290
8JDJ|1|w|G|291
8JDJ|1|w|A|292
8JDJ|1|w|C|293
8JDJ|1|w|U|294
8JDJ|1|w|C|295

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 8

40S ribosomal protein S11