HL_8JDJ_091

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACCCGG

Length

8 nucleotides

Bulged bases

8JDJ|1|w|A|500, 8JDJ|1|w|C|502, 8JDJ|1|w|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_091 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3927

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8JDJ|1|w|C|498
8JDJ|1|w|G|499
8JDJ|1|w|A|500
8JDJ|1|w|C|501
8JDJ|1|w|C|502
8JDJ|1|w|C|503
8JDJ|1|w|G|504
8JDJ|1|w|G|505

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain AK

40S ribosomal protein S24