HL_8JDJ_096

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8JDJ|1|w|G|891, 8JDJ|1|w|U|896, 8JDJ|1|w|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDJ_096 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3374

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8JDJ|1|w|U|885
8JDJ|1|w|A|886
8JDJ|1|w|U|887
8JDJ|1|w|U|888
8JDJ|1|w|U|889
8JDJ|1|w|U|890
8JDJ|1|w|G|891
8JDJ|1|w|U|892
8JDJ|1|w|U|893
8JDJ|1|w|G|894
8JDJ|1|w|G|895
8JDJ|1|w|U|896
8JDJ|1|w|U|897
8JDJ|1|w|U|898
8JDJ|1|w|U|899
8JDJ|1|w|C|900
8JDJ|1|w|G|901

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6