HL_8JDJ_120
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (PSU)UUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8JDJ|1|D|A|3642, 8JDJ|1|D|A|3643, 8JDJ|1|D|U|3644, 8JDJ|1|D|A|3648
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_120 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.2153
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8JDJ|1|D|PSU|3639
8JDJ|1|D|U|3640
8JDJ|1|D|U|3641
8JDJ|1|D|A|3642
8JDJ|1|D|A|3643
8JDJ|1|D|U|3644
8JDJ|1|D|U|3645
8JDJ|1|D|A|3646
8JDJ|1|D|A|3647
8JDJ|1|D|A|3648
8JDJ|1|D|A|3649
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8
- Chain o
- 60S ribosomal protein L37
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