HL_8JDK_005
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CCU(56B)UCA(5MC)G
- Length
- 9 nucleotides
- Bulged bases
- 8JDK|1|C|U|33
- QA status
- Modified nucleotides: 56B, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_005 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.1557
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8JDK|1|C|C|31
8JDK|1|C|C|32
8JDK|1|C|U|33
8JDK|1|C|56B|34
8JDK|1|C|U|35
8JDK|1|C|C|36
8JDK|1|C|A|37
8JDK|1|C|5MC|38
8JDK|1|C|G|39
Current chains
- Chain C
- tRNA (Asp)
Nearby chains
- Chain A
- mRNA
- Chain AB
- 40S ribosomal protein S15
- Chain AJ
- 40S ribosomal protein S23
- Chain AQ
- 40S ribosomal protein S30
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
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