HL_8JDK_012

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8JDK|1|D|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_012 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1298

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8JDK|1|D|G|230
8JDK|1|D|U|231
8JDK|1|D|G|232
8JDK|1|D|U|233
8JDK|1|D|G|234
8JDK|1|D|A|235
8JDK|1|D|G|236
8JDK|1|D|G|237
8JDK|1|D|C|238

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain F

5.8S ribosomal RNA; 5.8S rRNA

Chain I

60S ribosomal protein L4

Chain d

60S ribosomal protein L26