HL_8JDK_013

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8JDK|1|D|G|294, 8JDK|1|D|A|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_013 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.3384

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8JDK|1|D|C|289
8JDK|1|D|U|290
8JDK|1|D|U|291
8JDK|1|D|G|292
8JDK|1|D|G|293
8JDK|1|D|G|294
8JDK|1|D|A|295
8JDK|1|D|A|296
8JDK|1|D|U|297
8JDK|1|D|G|298

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L13

Chain S

60S ribosomal protein L15

Chain f

60S ribosomal protein L27a

Chain t

60S ribosomal protein L36a