HL_8JDK_024
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_024 not in the Motif Atlas
- Geometric match to HL_4LX6_002
- Geometric discrepancy: 0.3852
- The information below is about HL_4LX6_002
- Detailed Annotation
- Purine riboswitch
- Broad Annotation
- Purine riboswitch
- Motif group
- HL_46333.1
- Basepair signature
- cWW-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8JDK|1|D|C|1436
8JDK|1|D|C|1437
8JDK|1|D|U|1438
8JDK|1|D|C|1439
8JDK|1|D|U|1440
8JDK|1|D|C|1441
8JDK|1|D|C|1442
8JDK|1|D|A|1443
8JDK|1|D|G|1444
8JDK|1|D|U|1445
8JDK|1|D|C|1446
8JDK|1|D|C|1447
8JDK|1|D|G|1448
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L7
- Chain V
- 60S ribosomal protein L18
- Chain g
- 60S ribosomal protein L29
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