HL_8JDK_029

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

8JDK|1|D|C|1676, 8JDK|1|D|C|1678, 8JDK|1|D|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_029 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.1941

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8JDK|1|D|C|1675
8JDK|1|D|C|1676
8JDK|1|D|PSU|1677
8JDK|1|D|C|1678
8JDK|1|D|A|1679
8JDK|1|D|G|1680

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain f

60S ribosomal protein L27a

Chain g

60S ribosomal protein L29

Chain t

60S ribosomal protein L36a