HL_8JDK_048

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

8JDK|1|D|C|2814

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_048 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0531

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8JDK|1|D|U|2810
8JDK|1|D|G|2811
8JDK|1|D|A|2812
8JDK|1|D|A|2813
8JDK|1|D|C|2814
8JDK|1|D|A2M|2815
8JDK|1|D|G|2816

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L19