HL_8JDK_049

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8JDK|1|D|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_049 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.0791

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

8JDK|1|D|C|2872
8JDK|1|D|U|2873
8JDK|1|D|U|2874
8JDK|1|D|C|2875
8JDK|1|D|G|2876
8JDK|1|D|G|2877

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain s

60S ribosomal protein L41

Chain u

60S ribosomal protein L37a

Chain w

Small subunit ribosomal RNA; SSU rRNA