HL_8JDK_051

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

8JDK|1|D|A|3642, 8JDK|1|D|A|3643, 8JDK|1|D|U|3644, 8JDK|1|D|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_051 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.3103

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8JDK|1|D|G|3638
8JDK|1|D|PSU|3639
8JDK|1|D|U|3640
8JDK|1|D|U|3641
8JDK|1|D|A|3642
8JDK|1|D|A|3643
8JDK|1|D|U|3644
8JDK|1|D|U|3645
8JDK|1|D|A|3646
8JDK|1|D|A|3647
8JDK|1|D|A|3648
8JDK|1|D|A|3649
8JDK|1|D|C|3650

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain o

60S ribosomal protein L37