HL_8JDK_059

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

8JDK|1|D|A|4214, 8JDK|1|D|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_059 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1247

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8JDK|1|D|U|4210
8JDK|1|D|C|4211
8JDK|1|D|A|4212
8JDK|1|D|A|4213
8JDK|1|D|A|4214
8JDK|1|D|C|4215
8JDK|1|D|G|4216
8JDK|1|D|G|4217
8JDK|1|D|U|4218
8JDK|1|D|A|4219
8JDK|1|D|6MZ|4220
8JDK|1|D|C|4221
8JDK|1|D|G|4222

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L10-like

Chain Y

60S ribosomal protein L21

Chain g

60S ribosomal protein L29