HL_8JDK_065

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

8JDK|1|D|U|4419, 8JDK|1|D|A|4422

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_065 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3769

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8JDK|1|D|C|4417
8JDK|1|D|G|4418
8JDK|1|D|U|4419
8JDK|1|D|PSU|4420
8JDK|1|D|C|4421
8JDK|1|D|A|4422
8JDK|1|D|PSU|4423
8JDK|1|D|A|4424
8JDK|1|D|G|4425

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain O

60S ribosomal protein L10-like

Chain r

Ubiquitin-60S ribosomal protein L40