HL_8JDK_069

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_069 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.0543

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8JDK|1|D|C|4603
8JDK|1|D|G|4604
8JDK|1|D|A|4605
8JDK|1|D|G|4606
8JDK|1|D|A|4607
8JDK|1|D|G|4608

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L9

Chain r

Ubiquitin-60S ribosomal protein L40