HL_8JDK_081

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

8JDK|1|F|U|124, 8JDK|1|F|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_081 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3722

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8JDK|1|F|G|122
8JDK|1|F|U|123
8JDK|1|F|U|124
8JDK|1|F|C|125
8JDK|1|F|C|126
8JDK|1|F|U|127
8JDK|1|F|C|128

Current chains

Chain F

5.8S ribosomal RNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain c

60S ribosomal protein L23a