HL_8JDK_089
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8JDK|1|w|C|450, 8JDK|1|w|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_089 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.115
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8JDK|1|w|C|441
8JDK|1|w|C|442
8JDK|1|w|U|443
8JDK|1|w|G|444
8JDK|1|w|A|445
8JDK|1|w|G|446
8JDK|1|w|A|447
8JDK|1|w|A|448
8JDK|1|w|A|449
8JDK|1|w|C|450
8JDK|1|w|G|451
8JDK|1|w|G|452
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S4, X isoform
- Chain 3
- 40S ribosomal protein S6
- Chain 5
- 40S ribosomal protein S8
- Chain AK
- 40S ribosomal protein S24
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